U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HESX1 HESX homeobox 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102412660, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HESX1
Gene description
HESX homeobox 1
See related
EnsemblRapid:ENSBALG00030036245
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 21 NC_059177.1 (43746512..43769943)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 21 NC_058363.1 (43455787..43479219)

Chromosome 21 - NC_059177.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal heavy chain 12 Neighboring gene 40S ribosomal protein S27-like Neighboring gene ankyrin repeat and SOCS box containing 14 Neighboring gene adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 Neighboring gene interleukin 17 receptor D Neighboring gene Rho guanine nucleotide exchange factor 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in forebrain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pituitary gland development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
homeobox expressed in ES cells 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059177.1 Reference NDDB_SH_1 Primary Assembly

    Range
    43746512..43769943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044934378.2 → XP_044790313.1  homeobox expressed in ES cells 1 isoform X4

    Related
    ENSBALP00030066910.1, ENSBALT00030100277.1
    Conserved Domains (1) summary
    cd00086
    Location:119 → 133
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  2. XM_044934376.2 → XP_044790311.2  homeobox expressed in ES cells 1 isoform X3

  3. XM_044934377.2 → XP_044790312.2  homeobox expressed in ES cells 1 isoform X3

    Related
    ENSBALP00030066974.1, ENSBALT00030100386.1

  4. XM_044934373.2 → XP_044790308.1  homeobox expressed in ES cells 1 isoform X2

    Conserved Domains (1) summary
    smart00389
    Location:95 → 151
    HOX; Homeodomain

  5. XM_044934374.2 → XP_044790309.1  homeobox expressed in ES cells 1 isoform X2

    Conserved Domains (1) summary
    smart00389
    Location:95 → 151
    HOX; Homeodomain

  6. XM_044934375.2 → XP_044790310.1  homeobox expressed in ES cells 1 isoform X2

    Related
    ENSBALP00030066894.1, ENSBALT00030100254.1
    Conserved Domains (1) summary
    smart00389
    Location:95 → 151
    HOX; Homeodomain

  7. XM_044934372.2 → XP_044790307.1  homeobox expressed in ES cells 1 isoform X1

    Related
    ENSBALP00030066969.1, ENSBALT00030100378.1
    Conserved Domains (1) summary
    pfam00046
    Location:111 → 164
    Homeobox; Homeobox domain

  8. XM_044934371.2 → XP_044790306.1  homeobox expressed in ES cells 1 isoform X1

    Related
    ENSBALP00030066934.1, ENSBALT00030100319.1
    Conserved Domains (1) summary
    pfam00046
    Location:111 → 164
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.