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TOM1 target of myb1 membrane trafficking protein [ Bubalus bubalis (water buffalo) ]

Gene ID: 102411281, updated on 10-Mar-2024

Summary

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Gene symbol
TOM1
Gene description
target of myb1 membrane trafficking protein
See related
EnsemblRapid:ENSBALG00030019428
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 4 NC_059160.1 (46586085..46626129, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 4 NC_058346.1 (45815845..45855886, complement)

Chromosome 4 - NC_059160.1Genomic Context describing neighboring genes Neighboring gene minichromosome maintenance complex component 5 Neighboring gene heme oxygenase 1 Neighboring gene HMG-box containing 4 Neighboring gene intestine specific homeobox

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
target of Myb protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059160.1 Reference NDDB_SH_1 Primary Assembly

    Range
    46586085..46626129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044941374.2 → XP_044797309.1  target of Myb protein 1 isoform X9

    Conserved Domains (2) summary
    cd14236
    Location:73 → 164
    GAT_TOM1; canonical GAT domain found in target of Myb protein 1 (Tom1)
    cl02544
    Location:12 → 73
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  2. XM_044941372.2 → XP_044797307.1  target of Myb protein 1 isoform X7

    Conserved Domains (2) summary
    cd14236
    Location:122 → 214
    GAT_TOM1; canonical GAT domain found in target of Myb protein 1 (Tom1)
    cl02544
    Location:12 → 122
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  3. XM_025283557.3 → XP_025139342.1  target of Myb protein 1 isoform X5

    Related
    ENSBALP00030036602.1, ENSBALT00030054482.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14236
    Location:214 → 308
    GAT_TOM1; GAT domain found in target of Myb protein 1 (Tom1)

  4. XM_025283555.3 → XP_025139340.1  target of Myb protein 1 isoform X4

    Related
    ENSBALP00030036766.1, ENSBALT00030054705.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14236
    Location:214 → 308
    GAT_TOM1; GAT domain found in target of Myb protein 1 (Tom1)

  5. XM_044941373.2 → XP_044797308.1  target of Myb protein 1 isoform X8

    Conserved Domains (2) summary
    cd14236
    Location:104 → 195
    GAT_TOM1; canonical GAT domain found in target of Myb protein 1 (Tom1)
    cl02544
    Location:12 → 104
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  6. XM_044941371.2 → XP_044797306.1  target of Myb protein 1 isoform X6

    Conserved Domains (2) summary
    cd14236
    Location:153 → 245
    GAT_TOM1; canonical GAT domain found in target of Myb protein 1 (Tom1)
    cl02544
    Location:12 → 153
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  7. XM_025283554.3 → XP_025139339.1  target of Myb protein 1 isoform X3

    Related
    ENSBALP00030036801.1, ENSBALT00030054752.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 183
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14236
    Location:245 → 339
    GAT_TOM1; GAT domain found in target of Myb protein 1 (Tom1)

  8. XM_025283553.3 → XP_025139338.1  target of Myb protein 1 isoform X2

    Conserved Domains (2) summary
    cd03565
    Location:12 → 183
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14236
    Location:245 → 339
    GAT_TOM1; GAT domain found in target of Myb protein 1 (Tom1)

  9. XM_025283552.3 → XP_025139337.1  target of Myb protein 1 isoform X1

    Conserved Domains (2) summary
    cd03565
    Location:12 → 183
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14236
    Location:245 → 339
    GAT_TOM1; GAT domain found in target of Myb protein 1 (Tom1)
Nucleotide Protein
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