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MSH2 mutS homolog 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102409227, updated on 10-Mar-2024

Summary

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Gene symbol
MSH2
Gene description
mutS homolog 2
See related
EnsemblRapid:ENSBALG00030033304
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 12 NC_059168.1 (29319310..29409553)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 12 NC_058354.1 (29380888..29471191)

Chromosome 12 - NC_059168.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123328701 Neighboring gene epithelial cell adhesion molecule Neighboring gene potassium two pore domain channel subfamily K member 12 Neighboring gene uncharacterized LOC123328469

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in somatic recombination of immunoglobulin genes involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutSalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA mismatch repair protein Msh2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059168.1 Reference NDDB_SH_1 Primary Assembly

    Range
    29319310..29409553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006048042.4 → XP_006048104.1  DNA mismatch repair protein Msh2

    Related
    ENSBALP00030061609.1, ENSBALT00030092243.1
    Conserved Domains (6) summary
    cd03285
    Location:633 → 852
    ABC_MSH2_euk; ATP-binding cassette domain of eukaryotic MutS2 homolog
    COG0249
    Location:23 → 853
    MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
    pfam01624
    Location:18 → 132
    MutS_I; MutS domain I
    pfam05188
    Location:158 → 284
    MutS_II; MutS domain II
    pfam05190
    Location:473 → 569
    MutS_IV; MutS family domain IV
    pfam05192
    Location:305 → 423
    MutS_III; MutS domain III
Nucleotide Protein
Heading Accession and Version

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