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ZNF711 zinc finger protein 711 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102408783, updated on 10-Mar-2024

Summary

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Gene symbol
ZNF711
Gene description
zinc finger protein 711
See related
EnsemblRapid:ENSBALG00030011183
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
10
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) X NC_059181.1 (75566338..75594907)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) X NC_058367.1 (77468407..77496979)

Chromosome X - NC_059181.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein O like Neighboring gene spermidine/spermine N1-acetyl transferase like 1 Neighboring gene POF1B actin binding protein Neighboring gene mitochondrial import inner membrane translocase subunit Tim17-B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 711

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059181.1 Reference NDDB_SH_1 Primary Assembly

    Range
    75566338..75594907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025275996.2 → XP_025131781.1  zinc finger protein 711 isoform X4

    Related
    ENSBALP00030021523.1, ENSBALT00030031371.1
    Conserved Domains (5) summary
    COG5048
    Location:545 → 802
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:552 → 572
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:428 → 450
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:65 → 413
    Zfx_Zfy_act; Zfx / Zfy transcription activation region
    pfam13909
    Location:521 → 546
    zf-H2C2_5; C2H2-type zinc-finger domain

  2. XM_025275993.2 → XP_025131778.1  zinc finger protein 711 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:459 → 716
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:466 → 486
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:27 → 327
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  3. XM_044936577.1 → XP_044792512.1  zinc finger protein 711 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:459 → 716
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:466 → 486
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:27 → 327
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  4. XM_025275994.2 → XP_025131779.1  zinc finger protein 711 isoform X3

    Related
    ENSBALP00030021550.1, ENSBALT00030031416.1
    Conserved Domains (4) summary
    COG5048
    Location:459 → 716
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:466 → 486
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:27 → 327
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  5. XM_044936578.1 → XP_044792513.1  zinc finger protein 711 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:459 → 716
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:466 → 486
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:27 → 327
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  6. XM_006065020.3 → XP_006065082.1  zinc finger protein 711 isoform X1

    See identical proteins and their annotated locations for XP_006065082.1

    Conserved Domains (4) summary
    COG5048
    Location:500 → 757
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:507 → 527
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:383 → 405
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:65 → 368
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  7. XM_006065019.3 → XP_006065081.1  zinc finger protein 711 isoform X1

    See identical proteins and their annotated locations for XP_006065081.1

    Related
    ENSBALP00030021535.1, ENSBALT00030031390.1
    Conserved Domains (4) summary
    COG5048
    Location:500 → 757
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:507 → 527
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:383 → 405
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:65 → 368
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  8. XM_044936576.1 → XP_044792511.1  zinc finger protein 711 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:500 → 757
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:507 → 527
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:383 → 405
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:65 → 368
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  9. XM_006065018.3 → XP_006065080.1  zinc finger protein 711 isoform X1

    See identical proteins and their annotated locations for XP_006065080.1

    Conserved Domains (4) summary
    COG5048
    Location:500 → 757
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:507 → 527
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:383 → 405
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:65 → 368
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  10. XM_025275992.2 → XP_025131777.1  zinc finger protein 711 isoform X2

    Related
    ENSBALP00030021563.1, ENSBALT00030031437.1
    Conserved Domains (4) summary
    COG5048
    Location:471 → 728
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:478 → 498
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:354 → 376
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:36 → 339
    Zfx_Zfy_act; Zfx / Zfy transcription activation region

  11. XM_025275991.2 → XP_025131776.1  zinc finger protein 711 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:500 → 757
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:507 → 527
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:383 → 405
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:65 → 368
    Zfx_Zfy_act; Zfx / Zfy transcription activation region
Nucleotide Protein
Heading Accession and Version

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