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SLC1A6 solute carrier family 1 member 6 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102408618, updated on 10-Mar-2024

Summary

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Gene symbol
SLC1A6
Gene description
solute carrier family 1 member 6
See related
EnsemblRapid:ENSBALG00030028989
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 9 NC_059165.1 (102152190..102178610, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 9 NC_058351.1 (100720617..100747047, complement)

Chromosome 9 - NC_059165.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 7C1-like Neighboring gene olfactory receptor 7C2 Neighboring gene 60S ribosomal protein L23a-like Neighboring gene tektin like 1 Neighboring gene heterogeneous nuclear ribonucleoproteins C1/C2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-glutamate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neutral L-amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
excitatory amino acid transporter 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059165.1 Reference NDDB_SH_1 Primary Assembly

    Range
    102152190..102178610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025293701.3 → XP_025149486.1  excitatory amino acid transporter 4 isoform X2

    Related
    ENSBALP00030053976.1, ENSBALT00030080600.1
    Conserved Domains (1) summary
    pfam00375
    Location:58 → 477
    SDF; Sodium:dicarboxylate symporter family

  2. XM_006073516.4 → XP_006073578.1  excitatory amino acid transporter 4 isoform X1

    See identical proteins and their annotated locations for XP_006073578.1

    Related
    ENSBALP00030053961.1, ENSBALT00030080570.1
    Conserved Domains (1) summary
    pfam00375
    Location:58 → 522
    SDF; Sodium:dicarboxylate symporter family

  3. XM_006073517.4 → XP_006073579.1  excitatory amino acid transporter 4 isoform X1

    See identical proteins and their annotated locations for XP_006073579.1

    Related
    ENSBALP00030053970.1, ENSBALT00030080589.1
    Conserved Domains (1) summary
    pfam00375
    Location:58 → 522
    SDF; Sodium:dicarboxylate symporter family
Nucleotide Protein
Heading Accession and Version

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