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RFX4 regulatory factor X4 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102407939, updated on 10-Mar-2024

Summary

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Gene symbol
RFX4
Gene description
regulatory factor X4
See related
EnsemblRapid:ENSBALG00030018903
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 4 NC_059160.1 (50063650..50234665, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 4 NC_058346.1 (49320589..49491612, complement)

Chromosome 4 - NC_059160.1Genomic Context describing neighboring genes Neighboring gene RIC8 guanine nucleotide exchange factor B Neighboring gene uncharacterized LOC123333231 Neighboring gene uncharacterized LOC112584527 Neighboring gene RNA polymerase III subunit B Neighboring gene uncharacterized LOC123333232 Neighboring gene t-complex 11 like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor RFX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059160.1 Reference NDDB_SH_1 Primary Assembly

    Range
    50063650..50234665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044941397.2 → XP_044797332.2  transcription factor RFX4 isoform X2

    Conserved Domains (1) summary
    pfam02257
    Location:58 → 136
    RFX_DNA_binding; RFX DNA-binding domain

  2. XM_006069578.4 → XP_006069640.4  transcription factor RFX4 isoform X1

    Related
    ENSBALP00030035667.1, ENSBALT00030053038.1
    Conserved Domains (1) summary
    pfam02257
    Location:59 → 134
    RFX_DNA_binding; RFX DNA-binding domain

  3. XM_044941398.2 → XP_044797333.2  transcription factor RFX4 isoform X3

  4. XM_045165388.1 → XP_045021323.1  transcription factor RFX4 isoform X5

    Related
    ENSBALP00030035637.1, ENSBALT00030052984.1
    Conserved Domains (1) summary
    pfam02257
    Location:68 → 143
    RFX_DNA_binding; RFX DNA-binding domain

  5. XM_006069579.4 → XP_006069641.4  transcription factor RFX4 isoform X4

    Related
    ENSBALP00030035611.1, ENSBALT00030052935.1
Nucleotide Protein
Heading Accession and Version

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