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CTCF CCCTC-binding factor [ Bubalus bubalis (water buffalo) ]

Gene ID: 102405235, updated on 10-Mar-2024

Summary

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Gene symbol
CTCF
Gene description
CCCTC-binding factor
See related
EnsemblRapid:ENSBALG00030040842
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
16
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 18 NC_059174.1 (34726932..34772614)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 18 NC_058360.1 (34718113..34763824)

Chromosome 18 - NC_059174.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112580252 Neighboring gene RHO family interacting cell polarization regulator 1 Neighboring gene uncharacterized LOC112580253 Neighboring gene uncharacterized LOC123330424 Neighboring gene capping protein regulator and myosin 1 linker 2 Neighboring gene ACD shelterin complex subunit and telomerase recruitment factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor CTCF

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290909.1 → NP_001277838.1  transcriptional repressor CTCF

    See identical proteins and their annotated locations for NP_001277838.1

    Status: PROVISIONAL

    Source sequence(s)
    KC020136
    UniProtKB/TrEMBL
    K7THR4
    Related
    ENSBALP00030075152.1, ENSBALT00030112850.1
    Conserved Domains (4) summary
    COG5048
    Location:266 → 428
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam06750
    Location:438 → 483
    DiS_P_DiS; Bacterial Peptidase A24 N-terminal domain
    pfam13465
    Location:394 → 418
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059174.1 Reference NDDB_SH_1 Primary Assembly

    Range
    34726932..34772614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044930670.2 → XP_044786605.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  2. XM_025268256.3 → XP_025124041.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  3. XM_006072033.4 → XP_006072095.1  transcriptional repressor CTCF isoform X3

    See identical proteins and their annotated locations for XP_006072095.1

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam06750
    Location:438 → 483
    DiS_P_DiS; Bacterial Peptidase A24 N-terminal domain
    pfam13465
    Location:394 → 418
    zf-H2C2_2; Zinc-finger double domain

  4. XM_025268259.3 → XP_025124044.1  transcriptional repressor CTCF isoform X1

    Related
    ENSBALP00030075160.1, ENSBALT00030112858.1
    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  5. XM_025268258.3 → XP_025124043.1  transcriptional repressor CTCF isoform X1

    Related
    ENSBALP00030075165.1, ENSBALT00030112863.1
    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  6. XM_006072034.4 → XP_006072096.1  transcriptional repressor CTCF isoform X4

    See identical proteins and their annotated locations for XP_006072096.1

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam06750
    Location:438 → 483
    DiS_P_DiS; Bacterial Peptidase A24 N-terminal domain
    pfam13465
    Location:394 → 418
    zf-H2C2_2; Zinc-finger double domain

  7. XM_006072029.4 → XP_006072091.1  transcriptional repressor CTCF isoform X2

    See identical proteins and their annotated locations for XP_006072091.1

    Related
    ENSBALP00030075157.1, ENSBALT00030112855.1
    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  8. XM_025268257.3 → XP_025124042.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  9. XM_044930671.2 → XP_044786606.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain
Nucleotide Protein
Heading Accession and Version

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