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SLC1A2 solute carrier family 1 member 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102403158, updated on 10-Mar-2024

Summary

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Gene symbol
SLC1A2
Gene description
solute carrier family 1 member 2
See related
EnsemblRapid:ENSBALG00030037509
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
18
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 16 NC_059172.1 (18961663..19129753)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 16 NC_058358.1 (18692459..18860676)

Chromosome 16 - NC_059172.1Genomic Context describing neighboring genes Neighboring gene four-jointed box kinase 1 Neighboring gene peptidase domain containing associated with muscle regeneration 1 Neighboring gene uncharacterized LOC123329723 Neighboring gene uncharacterized LOC112579573 Neighboring gene CD44 molecule (IN blood group) Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene pyruvate dehydrogenase complex component X Neighboring gene APAF1 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-glutamate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neutral L-amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
excitatory amino acid transporter 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059172.1 Reference NDDB_SH_1 Primary Assembly

    Range
    18961663..19129753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025266221.3 → XP_025122006.1  excitatory amino acid transporter 2 isoform X2

    Related
    ENSBALP00030069745.1, ENSBALT00030104357.1
    Conserved Domains (1) summary
    pfam00375
    Location:47 → 497
    SDF; Sodium:dicarboxylate symporter family

  2. XM_006062355.4 → XP_006062417.1  excitatory amino acid transporter 2 isoform X3

    See identical proteins and their annotated locations for XP_006062417.1

    Related
    ENSBALP00030069711.1, ENSBALT00030104311.1
    Conserved Domains (1) summary
    pfam00375
    Location:46 → 496
    SDF; Sodium:dicarboxylate symporter family

  3. XM_044929258.2 → XP_044785193.1  excitatory amino acid transporter 2 isoform X1

    Conserved Domains (1) summary
    pfam00375
    Location:37 → 487
    SDF; Sodium:dicarboxylate symporter family

  4. XM_044929260.2 → XP_044785195.1  excitatory amino acid transporter 2 isoform X5

  5. XM_044929261.2 → XP_044785196.1  excitatory amino acid transporter 2 isoform X6

    Related
    ENSBALP00030069620.1, ENSBALT00030104190.1
    Conserved Domains (1) summary
    cl00573
    Location:42 → 406
    SDF; Sodium:dicarboxylate symporter family

  6. XM_044929256.2 → XP_044785191.1  excitatory amino acid transporter 2 isoform X1

    Related
    ENSBALP00030069689.1, ENSBALT00030104282.1
    Conserved Domains (1) summary
    pfam00375
    Location:37 → 487
    SDF; Sodium:dicarboxylate symporter family

  7. XM_044929259.2 → XP_044785194.1  excitatory amino acid transporter 2 isoform X1

    Related
    ENSBALP00030069657.1, ENSBALT00030104239.1
    Conserved Domains (1) summary
    pfam00375
    Location:37 → 487
    SDF; Sodium:dicarboxylate symporter family

  8. XM_006062356.4 → XP_006062418.1  excitatory amino acid transporter 2 isoform X4

    See identical proteins and their annotated locations for XP_006062418.1

    Related
    ENSBALP00030069602.1, ENSBALT00030104168.1
    Conserved Domains (1) summary
    pfam00375
    Location:43 → 493
    SDF; Sodium:dicarboxylate symporter family

  9. XM_025266223.3 → XP_025122008.3  excitatory amino acid transporter 2 isoform X1

    Conserved Domains (1) summary
    pfam00375
    Location:37 → 487
    SDF; Sodium:dicarboxylate symporter family
Nucleotide Protein
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