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GGPS1 geranylgeranyl diphosphate synthase 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102402997, updated on 10-Mar-2024

Summary

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Gene symbol
GGPS1
Gene description
geranylgeranyl diphosphate synthase 1
See related
EnsemblRapid:ENSBALG00030002576
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 4 NC_059160.1 (127504963..127518457)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 4 NC_058346.1 (126354391..126367885)

Chromosome 4 - NC_059160.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene RNA binding motif protein 34 Neighboring gene AT-rich interaction domain 4B Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene tubulin folding cofactor E Neighboring gene small ubiquitin-related modifier 2 Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl pyrophosphate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059160.1 Reference NDDB_SH_1 Primary Assembly

    Range
    127504963..127518457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006075485.4 → XP_006075547.1  geranylgeranyl pyrophosphate synthase

    See identical proteins and their annotated locations for XP_006075547.1

    Conserved Domains (1) summary
    pfam00348
    Location:9 → 251
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_025284531.3 → XP_025140316.1  geranylgeranyl pyrophosphate synthase

    Related
    ENSBALP00030004546.1, ENSBALT00030007112.1
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 251
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein
Heading Accession and Version

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