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SP110 SP110 nuclear body protein [ Bubalus bubalis (water buffalo) ]

Gene ID: 102401556, updated on 10-Mar-2024

Summary

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Gene symbol
SP110
Gene description
SP110 nuclear body protein
See related
EnsemblRapid:ENSBALG00030029061
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human all
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Genomic context

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Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (170445412..170494964, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (169324718..169374265, complement)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 14 Neighboring gene uncharacterized LOC102405215 Neighboring gene SP140 nuclear body protein Neighboring gene uncharacterized LOC112582941 Neighboring gene nuclear autoantigen Sp-100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sp110 nuclear body protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    170445412..170494964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025278429.3 → XP_025134214.2  sp110 nuclear body protein isoform X7

    Conserved Domains (3) summary
    smart00258
    Location:409 → 481
    SAND; SAND domain
    cd15626
    Location:498 → 539
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    cl02556
    Location:563 → 661
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  2. XM_025278424.3 → XP_025134209.2  sp110 nuclear body protein isoform X2

    Conserved Domains (4) summary
    smart00258
    Location:479 → 551
    SAND; SAND domain
    PHA03247
    Location:120 → 342
    PHA03247; large tegument protein UL36; Provisional
    cd15626
    Location:568 → 609
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    cl02556
    Location:633 → 731
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  3. XM_025278428.3 → XP_025134213.2  sp110 nuclear body protein isoform X6

    Conserved Domains (3) summary
    smart00258
    Location:449 → 521
    SAND; SAND domain
    cd15626
    Location:538 → 579
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    cl02556
    Location:603 → 701
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  4. XM_006047066.4 → XP_006047128.2  sp110 nuclear body protein isoform X3

    Related
    ENSBALP00030054046.1, ENSBALT00030080734.1
    Conserved Domains (3) summary
    smart00258
    Location:472 → 544
    SAND; SAND domain
    cd15626
    Location:561 → 602
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    cl02556
    Location:626 → 724
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  5. XM_025278431.3 → XP_025134216.2  sp110 nuclear body protein isoform X9

    Related
    ENSBALP00030054031.1, ENSBALT00030080708.1
    Conserved Domains (2) summary
    smart00258
    Location:499 → 571
    SAND; SAND domain
    cl02556
    Location:583 → 605
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  6. XM_025278423.3 → XP_025134208.2  sp110 nuclear body protein isoform X1

    Conserved Domains (3) summary
    smart00258
    Location:499 → 571
    SAND; SAND domain
    cd15626
    Location:587 → 628
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    cl02556
    Location:652 → 750
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  7. XM_025278426.3 → XP_025134211.2  sp110 nuclear body protein isoform X4

    Related
    ENSBALP00030054058.1, ENSBALT00030080758.1
    Conserved Domains (3) summary
    smart00258
    Location:499 → 571
    SAND; SAND domain
    cd15626
    Location:588 → 629
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    cl02556
    Location:653 → 704
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  8. XM_025278422.3 → XP_025134207.2  sp110 nuclear body protein isoform X8

    Related
    ENSBALP00030054050.1, ENSBALT00030080744.1
    Conserved Domains (3) summary
    smart00258
    Location:499 → 571
    SAND; SAND domain
    cd15626
    Location:588 → 629
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    cl02556
    Location:653 → 751
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  9. XM_025278427.3 → XP_025134212.2  sp110 nuclear body protein isoform X5

    Conserved Domains (3) summary
    cd05501
    Location:605 → 703
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    smart00258
    Location:451 → 523
    SAND; SAND domain
    cd15626
    Location:540 → 581
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
Nucleotide Protein
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