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RER1 retention in endoplasmic reticulum sorting receptor 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102401125, updated on 10-Mar-2024

Summary

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Gene symbol
RER1
Gene description
retention in endoplasmic reticulum sorting receptor 1
See related
EnsemblRapid:ENSBALG00030004368
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 5 NC_059161.1 (30630582..30641144)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 5 NC_058347.1 (30006274..30016833)

Chromosome 5 - NC_059161.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112585077 Neighboring gene MORN repeat containing 1 Neighboring gene peroxisomal biogenesis factor 10 Neighboring gene phospholipase C eta 2 Neighboring gene uncharacterized LOC123333682

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein retention in ER lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RER1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059161.1 Reference NDDB_SH_1 Primary Assembly

    Range
    30630582..30641144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006044649.4 → XP_006044711.1  protein RER1

    See identical proteins and their annotated locations for XP_006044711.1

    Related
    ENSBALP00030008009.1, ENSBALT00030012188.1
    Conserved Domains (1) summary
    pfam03248
    Location:20 → 185
    Rer1; Rer1 family

  2. XM_025285776.3 → XP_025141561.1  protein RER1

    Conserved Domains (1) summary
    pfam03248
    Location:20 → 185
    Rer1; Rer1 family
Nucleotide Protein
Heading Accession and Version

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