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CCNL1 cyclin L1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102399980, updated on 10-Mar-2024

Summary

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Gene symbol
CCNL1
Gene description
cyclin L1
See related
EnsemblRapid:ENSBALG00030034444
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 1 NC_059157.1 (155468184..155481967)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 1 NC_058343.1 (154104175..154123059)

Chromosome 1 - NC_059157.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112585766 Neighboring gene uncharacterized LOC112585772 Neighboring gene uncharacterized LOC112585774

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059157.1 Reference NDDB_SH_1 Primary Assembly

    Range
    155468184..155481967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025289330.3 → XP_025145115.1  cyclin-L1 isoform X2

    Conserved Domains (1) summary
    cl28538
    Location:74 → 274
    CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

  2. XM_006077375.4 → XP_006077437.1  cyclin-L1 isoform X1

    Related
    ENSBALP00030063813.1, ENSBALT00030095439.1
    Conserved Domains (2) summary
    smart00385
    Location:205 → 274
    CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
    cd00043
    Location:82 → 154
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

RNA

  1. XR_006552106.1 RNA Sequence

  2. XR_006552105.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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