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EDC4 enhancer of mRNA decapping 4 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102395704, updated on 10-Mar-2024

Summary

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Gene symbol
EDC4
Gene description
enhancer of mRNA decapping 4
See related
EnsemblRapid:ENSBALG00030038357
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
29
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 18 NC_059174.1 (34953815..34964950)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 18 NC_058360.1 (34944995..34956130)

Chromosome 18 - NC_059174.1Genomic Context describing neighboring genes Neighboring gene THAP domain containing 11 Neighboring gene nuclear transport factor 2 Neighboring gene neuritin 1 like Neighboring gene transfer RNA serine (anticodon AGA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
enhancer of mRNA-decapping protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059174.1 Reference NDDB_SH_1 Primary Assembly

    Range
    34953815..34964950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025268895.3 → XP_025124680.1  enhancer of mRNA-decapping protein 4 isoform X1

    Conserved Domains (3) summary
    sd00039
    Location:181 → 220
    7WD40; WD40 repeat [structural motif]
    pfam16529
    Location:115 → 442
    Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    cl26464
    Location:523 → 984
    Atrophin-1; Atrophin-1 family

  2. XM_006071994.4 → XP_006072056.1  enhancer of mRNA-decapping protein 4 isoform X2

    Related
    ENSBALP00030070809.1, ENSBALT00030106077.1
    Conserved Domains (3) summary
    pfam16529
    Location:115 → 442
    Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    sd00039
    Location:181 → 220
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:173 → 400
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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