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LOC102393741 collagen alpha-6(VI) chain [ Bubalus bubalis (water buffalo) ]

Gene ID: 102393741, updated on 28-Nov-2023

Summary

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Gene symbol
LOC102393741
Gene description
collagen alpha-6(VI) chain
See related
EnsemblRapid:ENSBALG00030018794
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Also known as
COL6A6
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Genomic context

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Location:
chromosome: 1
Exon count:
38
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 1 NC_059157.1 (196415490..196586670, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 1 NC_058343.1 (194986265..195158135, complement)

Chromosome 1 - NC_059157.1Genomic Context describing neighboring genes Neighboring gene ETS proto-oncogene 2, transcription factor Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene collagen type VI alpha 5 chain Neighboring gene uncharacterized LOC123466195 Neighboring gene collagen alpha-4(VI) chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-6(VI) chain
Names
collagen type VI alpha 6 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059157.1 Reference NDDB_SH_1 Primary Assembly

    Range
    196415490..196586670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006043436.4 → XP_006043498.3  collagen alpha-6(VI) chain isoform X2

    Related
    ENSBALP00030035415.1, ENSBALT00030052644.1

  2. XM_006043435.4 → XP_006043497.3  collagen alpha-6(VI) chain isoform X1

    Related
    ENSBALP00030035462.1, ENSBALT00030052717.1

  3. XM_025294082.3 → XP_025149867.3  collagen alpha-6(VI) chain isoform X1

Nucleotide Protein
Heading Accession and Version

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