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SEMA4A semaphorin 4A [ Bubalus bubalis (water buffalo) ]

Gene ID: 102390725, updated on 10-Mar-2024

Summary

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Gene symbol
SEMA4A
Gene description
semaphorin 4A
See related
EnsemblRapid:ENSBALG00030028693
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SEMA4A in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 6 NC_059162.1 (14668557..14694109, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 6 NC_058348.1 (14402669..14428081, complement)

Chromosome 6 - NC_059162.1Genomic Context describing neighboring genes Neighboring gene polyamine modulated factor 1 Neighboring gene solute carrier family 25 member 44 Neighboring gene uncharacterized LOC123333971 Neighboring gene uncharacterized LOC123465875 Neighboring gene lamin A/C Neighboring gene mex-3 RNA binding family member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059162.1 Reference NDDB_SH_1 Primary Assembly

    Range
    14668557..14694109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044944251.2 → XP_044800186.1  semaphorin-4A isoform X2

    Conserved Domains (2) summary
    smart00423
    Location:397 → 428
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:1 → 396
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_044944250.2 → XP_044800185.1  semaphorin-4A isoform X1

    Related
    ENSBALP00030053436.1, ENSBALT00030079824.1
    Conserved Domains (4) summary
    smart00423
    Location:497 → 528
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00096
    Location:574 → 582
    Ig; Ig strand B [structural motif]
    cl11960
    Location:567 → 639
    Ig; Immunoglobulin domain
    cl15693
    Location:56 → 496
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_044944253.2 → XP_044800188.1  semaphorin-4A isoform X2

    Conserved Domains (2) summary
    smart00423
    Location:397 → 428
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:1 → 396
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_006052000.4 → XP_006052062.1  semaphorin-4A isoform X1

    Related
    ENSBALP00030053449.1, ENSBALT00030079840.1
    Conserved Domains (4) summary
    smart00423
    Location:497 → 528
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00096
    Location:574 → 582
    Ig; Ig strand B [structural motif]
    cl11960
    Location:567 → 639
    Ig; Immunoglobulin domain
    cl15693
    Location:56 → 496
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  5. XM_044944252.2 → XP_044800187.1  semaphorin-4A isoform X2

    Conserved Domains (2) summary
    smart00423
    Location:397 → 428
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:1 → 396
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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