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SENP6 SUMO specific peptidase 6 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102388838, updated on 10-Mar-2024

Summary

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Gene symbol
SENP6
Gene description
SUMO specific peptidase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841955.1 (1447958..1562707, complement)

NW_005841955.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene interphotoreceptor matrix proteoglycan 1 Neighboring gene myosin VI Neighboring gene filamin A interacting protein 1 Neighboring gene transmembrane protein 30A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841955 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SUMO-specific endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein desumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of kinetochore assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of spindle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sentrin-specific protease 6
Names
SUMO1/sentrin specific peptidase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841955.1 Reference ASM45574v1 Primary Assembly

    Range
    1447958..1562707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025200093.1 → XP_025055878.1  sentrin-specific protease 6 isoform X8

    UniProtKB/TrEMBL
    A0A3Q0GCI6
    Conserved Domains (2) summary
    COG5160
    Location:638 → 750
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:951 → 1027
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  2. XM_025200092.1 → XP_025055877.1  sentrin-specific protease 6 isoform X7

    UniProtKB/TrEMBL
    A0A3Q0G8U9
    Conserved Domains (2) summary
    COG5160
    Location:659 → 771
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:972 → 1048
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  3. XM_025200087.1 → XP_025055872.1  sentrin-specific protease 6 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0G8U2
    Conserved Domains (2) summary
    COG5160
    Location:705 → 817
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:1018 → 1094
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  4. XM_006020481.2 → XP_006020543.2  sentrin-specific protease 6 isoform X2

    UniProtKB/TrEMBL
    A0A1U7RB37
    Conserved Domains (2) summary
    COG5160
    Location:700 → 812
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:1013 → 1089
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  5. XM_025200088.1 → XP_025055873.1  sentrin-specific protease 6 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GCI1
    Conserved Domains (2) summary
    COG5160
    Location:698 → 810
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:1011 → 1087
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  6. XM_025200091.1 → XP_025055876.1  sentrin-specific protease 6 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0G881
    Conserved Domains (2) summary
    COG5160
    Location:695 → 778
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:979 → 1055
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  7. XM_025200089.1 → XP_025055874.1  sentrin-specific protease 6 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0G8A2
    Conserved Domains (2) summary
    COG5160
    Location:693 → 805
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:1006 → 1082
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  8. XM_025200090.1 → XP_025055875.1  sentrin-specific protease 6 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0GBR7
    Conserved Domains (2) summary
    COG5160
    Location:677 → 789
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:990 → 1066
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  9. XM_025200094.1 → XP_025055879.1  sentrin-specific protease 6 isoform X9

    UniProtKB/TrEMBL
    A0A3Q0G8A6
    Conserved Domains (2) summary
    COG5160
    Location:512 → 624
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:825 → 901
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  10. XM_025200096.1 → XP_025055881.1  sentrin-specific protease 6 isoform X10

    UniProtKB/TrEMBL
    A0A3Q0G886
    Conserved Domains (2) summary
    COG5160
    Location:484 → 596
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:797 → 873
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

RNA

  1. XR_003093259.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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