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NLRX1 NLR family member X1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102385848, updated on 10-Mar-2024

Summary

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Gene symbol
NLRX1
Gene description
NLR family member X1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See NLRX1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842202.1 (65014..73742, complement)

NW_005842202.1Genomic Context describing neighboring genes Neighboring gene dynein regulatory complex subunit 12 homolog Neighboring gene NHERF family PDZ scaffold protein 4 Neighboring gene ATP binding cassette subfamily G member 4 Neighboring gene CUB and sushi domain-containing protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842202 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NLR family member X1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842202.1 Reference ASM45574v1 Primary Assembly

    Range
    65014..73742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006026630.3 → XP_006026692.1  NLR family member X1

    UniProtKB/TrEMBL
    A0A1U7S701
    Conserved Domains (4) summary
    sd00033
    Location:734 → 757
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:704 → 732
    LRR_AMN1; leucine-rich repeat [structural motif]
    cl21455
    Location:173 → 332
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl26161
    Location:703 → 893
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  2. XM_025207634.1 → XP_025063419.1  NLR family member X1

    UniProtKB/TrEMBL
    A0A1U7S701
    Conserved Domains (4) summary
    sd00033
    Location:734 → 757
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:704 → 732
    LRR_AMN1; leucine-rich repeat [structural motif]
    cl21455
    Location:173 → 332
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl26161
    Location:703 → 893
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
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