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JADE2 jade family PHD finger 2 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102381448, updated on 10-Mar-2024

Summary

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Gene symbol
JADE2
Gene description
jade family PHD finger 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841875.1 (2419189..2563768, complement)

NW_005841875.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112549151 Neighboring gene secretion associated Ras related GTPase 1B Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC112549155 Neighboring gene CDKN2A interacting protein N-terminal like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841875 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Jade-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841875.1 Reference ASM45574v1 Primary Assembly

    Range
    2419189..2563768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025196055.1 → XP_025051840.1  E3 ubiquitin-protein ligase Jade-2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0G0C1

  2. XM_025196053.1 → XP_025051838.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0G1A1

  3. XM_025196052.1 → XP_025051837.1  E3 ubiquitin-protein ligase Jade-2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0FX56

  4. XM_006017204.3 → XP_006017266.1  E3 ubiquitin-protein ligase Jade-2 isoform X3

    UniProtKB/TrEMBL
    A0A1U7RN26
    Conserved Domains (2) summary
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    cl26518
    Location:137 → 525
    EPL1; Enhancer of polycomb-like

  5. XM_025196054.1 → XP_025051839.1  E3 ubiquitin-protein ligase Jade-2 isoform X3

    UniProtKB/TrEMBL
    A0A1U7RN26
    Conserved Domains (2) summary
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    cl26518
    Location:137 → 525
    EPL1; Enhancer of polycomb-like
Nucleotide Protein
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