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LOC102381386 cAMP-specific 3',5'-cyclic phosphodiesterase 4D [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102381386, updated on 9-Nov-2023

Summary

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Gene symbol
LOC102381386
Gene description
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
PDE4D
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Genomic context

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See LOC102381386 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841985.1 (2665532..3096554, complement)

NW_005841985.1Genomic Context describing neighboring genes Neighboring gene RAB3C, member RAS oncogene family Neighboring gene uncharacterized LOC102381226 Neighboring gene uncharacterized LOC112549874

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841985 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-AMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cAMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cAMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cardiac muscle cell contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Names
phosphodiesterase 4D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841985.1 Reference ASM45574v1 Primary Assembly

    Range
    2665532..3096554 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025201141.1 → XP_025056926.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X6

    UniProtKB/TrEMBL
    A0A3Q0GER4

  2. XM_025201143.1 → XP_025056928.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X7

    UniProtKB/TrEMBL
    A0A3Q0GFK0

  3. XM_025201135.1 → XP_025056920.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X1

    UniProtKB/TrEMBL
    A0A3Q0GEQ9
    Conserved Domains (1) summary
    pfam00233
    Location:339 → 576
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  4. XM_025201137.1 → XP_025056922.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GBU6

  5. XM_025201138.1 → XP_025056923.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GFJ6

  6. XM_025201136.1 → XP_025056921.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X2

    UniProtKB/TrEMBL
    A0A3Q0GB80

  7. XM_025201140.1 → XP_025056925.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X6

    UniProtKB/TrEMBL
    A0A3Q0GER4

  8. XM_025201142.1 → XP_025056927.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X6

    UniProtKB/TrEMBL
    A0A3Q0GER4

  9. XM_025201139.1 → XP_025056924.1  cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X5

    UniProtKB/TrEMBL
    A0A3Q0GBD5
Nucleotide Protein
Heading Accession and Version

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