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SREBF1 sterol regulatory element binding transcription factor 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102380092, updated on 10-Mar-2024

Summary

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Gene symbol
SREBF1
Gene description
sterol regulatory element binding transcription factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842089.1 (142062..154165)

NW_005842089.1Genomic Context describing neighboring genes Neighboring gene dynein regulatory complex subunit 3 Neighboring gene target of myb1 like 2 membrane trafficking protein Neighboring gene retinoic acid induced 1 Neighboring gene uncharacterized LOC112550365

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842089 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol regulatory element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842089.1 Reference ASM45574v1 Primary Assembly

    Range
    142062..154165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025204586.1 → XP_025060371.1  sterol regulatory element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0GKX1
    Conserved Domains (2) summary
    PHA02030
    Location:145 → 231
    PHA02030; hypothetical protein
    cd00083
    Location:418 → 475
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  2. XM_014520105.2 → XP_014375591.1  sterol regulatory element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1U8D5I7
    Conserved Domains (1) summary
    cd00083
    Location:170 → 227
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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