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ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102379051, updated on 10-Mar-2024

Summary

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Gene symbol
ERCC3
Gene description
ERCC excision repair 3, TFIIH core complex helicase subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See ERCC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842335.1 (286858..318906, complement)

NW_005842335.1Genomic Context describing neighboring genes Neighboring gene bridging integrator 1 Neighboring gene cytochrome P450 27C1 Neighboring gene mitogen-activated protein kinase kinase kinase 1-like Neighboring gene mitogen-activated protein kinase kinase kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842335 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription and DNA repair factor IIH helicase subunit XPB
Names
excision repair cross-complementing rodent repair deficiency, complementation group 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842335.1 Reference ASM45574v1 Primary Assembly

    Range
    286858..318906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006028684.2 → XP_006028746.1  general transcription and DNA repair factor IIH helicase subunit XPB

    UniProtKB/TrEMBL
    A0A1U7RT04
    Conserved Domains (4) summary
    TIGR00603
    Location:56 → 776
    rad25; DNA repair helicase rad25
    pfam04851
    Location:311 → 468
    ResIII; Type III restriction enzyme, res subunit
    pfam13625
    Location:74 → 194
    Helicase_C_3; Helicase conserved C-terminal domain
    pfam16203
    Location:492 → 735
    ERCC3_RAD25_C; ERCC3/RAD25/XPB C-terminal helicase
Nucleotide Protein
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