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ERC1 ELKS/RAB6-interacting/CAST family member 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102378848, updated on 10-Mar-2024

Summary

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Gene symbol
ERC1
Gene description
ELKS/RAB6-interacting/CAST family member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841929.1 (2683060..3162583, complement)

NW_005841929.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112549560 Neighboring gene F-box and leucine rich repeat protein 14 Neighboring gene RAD52 homolog, DNA repair protein Neighboring gene WNK lysine deficient protein kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841929 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maintenance of presynaptic active zone structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuromuscular synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoskeleton of presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ELKS/Rab6-interacting/CAST family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841929.1 Reference ASM45574v1 Primary Assembly

    Range
    2683060..3162583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006019448.3 → XP_006019510.1  ELKS/Rab6-interacting/CAST family member 1

    UniProtKB/TrEMBL
    A0A1U7RUZ7
    Conserved Domains (4) summary
    pfam09457
    Location:1069 → 1109
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 982
    Cast; RIM-binding protein of the cytomatrix active zone
    pfam10211
    Location:769 → 832
    Ax_dynein_light; Axonemal dynein light chain
    cl21478
    Location:918 → 989
    ATP-synt_B; ATP synthase B/B' CF(0)
Nucleotide Protein
Heading Accession and Version

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