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LCP1 lymphocyte cytosolic protein 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102375565, updated on 10-Mar-2024

Summary

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Gene symbol
LCP1
Gene description
lymphocyte cytosolic protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842599.1 (329408..413312)

NW_005842599.1Genomic Context describing neighboring genes Neighboring gene rubicon like autophagy enhancer Neighboring gene leucine rich repeat containing 63 Neighboring gene uncharacterized LOC102375398 Neighboring gene carboxypeptidase B2 Neighboring gene zinc finger CCCH-type containing 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842599 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin filament network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin filament bundle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plastin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842599.1 Reference ASM45574v1 Primary Assembly

    Range
    329408..413312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006032966.3 → XP_006033028.1  plastin-2 isoform X2

    See identical proteins and their annotated locations for XP_006033028.1

    UniProtKB/TrEMBL
    A0A1U7SC48
    Conserved Domains (5) summary
    smart00033
    Location:395 → 498
    CH; Calponin homology domain
    COG5069
    Location:8 → 617
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00014
    Location:118 → 233
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00051
    Location:13 → 76
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam00307
    Location:262 → 367
    CH; Calponin homology (CH) domain

  2. XM_006032963.3 → XP_006033025.1  plastin-2 isoform X1

    UniProtKB/TrEMBL
    A0A1U7SJK1
    Conserved Domains (5) summary
    smart00033
    Location:419 → 522
    CH; Calponin homology domain
    COG5069
    Location:18 → 641
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00014
    Location:142 → 257
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00051
    Location:37 → 100
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam00307
    Location:286 → 391
    CH; Calponin homology (CH) domain

  3. XM_006032965.3 → XP_006033027.1  plastin-2 isoform X2

    See identical proteins and their annotated locations for XP_006033027.1

    UniProtKB/TrEMBL
    A0A1U7SC48
    Conserved Domains (5) summary
    smart00033
    Location:395 → 498
    CH; Calponin homology domain
    COG5069
    Location:8 → 617
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00014
    Location:118 → 233
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00051
    Location:13 → 76
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam00307
    Location:262 → 367
    CH; Calponin homology (CH) domain
Nucleotide Protein
Heading Accession and Version

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