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DNM1 dynamin 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102373892, updated on 10-Mar-2024

Summary

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Gene symbol
DNM1
Gene description
dynamin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842102.1 (167783..273602, complement)

NW_005842102.1Genomic Context describing neighboring genes Neighboring gene TruB pseudouridine synthase family member 2 Neighboring gene SWI5 homologous recombination repair protein Neighboring gene golgin A2 Neighboring gene CDKN1A interacting zinc finger protein 1 Neighboring gene bublin coiled coil protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842102 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dynamin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842102.1 Reference ASM45574v1 Primary Assembly

    Range
    167783..273602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006024303.3 → XP_006024365.1  dynamin-1 isoform X3

    UniProtKB/TrEMBL
    A0A1U7RUV0
    Conserved Domains (6) summary
    smart00053
    Location:6 → 245
    DYNc; Dynamin, GTPase
    COG0699
    Location:78 → 600
    CrfC; Replication fork clamp-binding protein CrfC (dynamin-like GTPase family) [Replication, recombination and repair]
    cd01256
    Location:514 → 625
    PH_dynamin; Dynamin pleckstrin homology (PH) domain
    pfam00169
    Location:516 → 619
    PH; PH domain
    pfam01031
    Location:217 → 502
    Dynamin_M; Dynamin central region
    pfam02212
    Location:653 → 741
    GED; Dynamin GTPase effector domain

  2. XM_025205022.1 → XP_025060807.1  dynamin-1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GMY5

  3. XM_025205021.1 → XP_025060806.1  dynamin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0GM48
    Conserved Domains (5) summary
    smart00053
    Location:6 → 245
    DYNc; Dynamin, GTPase
    cd01256
    Location:514 → 625
    PH_dynamin; Dynamin pleckstrin homology (PH) domain
    pfam01031
    Location:216 → 501
    Dynamin_M; Dynamin central region
    pfam02212
    Location:653 → 741
    GED; Dynamin GTPase effector domain
    cl26464
    Location:743 → 861
    Atrophin-1; Atrophin-1 family

  4. XM_006024302.2 → XP_006024364.1  dynamin-1 isoform X2

    UniProtKB/TrEMBL
    A0A1U7S4R1
    Conserved Domains (7) summary
    smart00053
    Location:6 → 245
    DYNc; Dynamin, GTPase
    COG0699
    Location:78 → 600
    CrfC; Replication fork clamp-binding protein CrfC (dynamin-like GTPase family) [Replication, recombination and repair]
    cd01256
    Location:514 → 625
    PH_dynamin; Dynamin pleckstrin homology (PH) domain
    pfam00169
    Location:516 → 619
    PH; PH domain
    pfam01031
    Location:217 → 502
    Dynamin_M; Dynamin central region
    pfam02212
    Location:653 → 741
    GED; Dynamin GTPase effector domain
    pfam16625
    Location:814 → 859
    ISET-FN3_linker; Unstructured linking region I-set and fnIII on Brother of CDO

  5. XM_025205023.1 → XP_025060808.1  dynamin-1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0GRN9
    Conserved Domains (5) summary
    smart00053
    Location:6 → 245
    DYNc; Dynamin, GTPase
    cd01256
    Location:514 → 625
    PH_dynamin; Dynamin pleckstrin homology (PH) domain
    pfam01031
    Location:216 → 501
    Dynamin_M; Dynamin central region
    pfam02212
    Location:653 → 741
    GED; Dynamin GTPase effector domain
    cl26464
    Location:743 → 842
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_003094246.1 RNA Sequence

  2. XR_323918.2 RNA Sequence

  3. XR_003094245.1 RNA Sequence

  4. XR_323917.3 RNA Sequence

  5. XR_323916.2 RNA Sequence

  6. XR_323919.2 RNA Sequence

  7. XR_003094247.1 RNA Sequence

Nucleotide Protein
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