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ITGB5 integrin subunit beta 5 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102373539, updated on 10-Mar-2024

Summary

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Gene symbol
ITGB5
Gene description
integrin subunit beta 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See ITGB5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841887.1 (4110113..4215034)

NW_005841887.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112549270 Neighboring gene heart development protein with EGF like domains 1 Neighboring gene mucin 13, cell surface associated Neighboring gene kalirin RhoGEF kinase Neighboring gene U1 spliceosomal RNA Neighboring gene uridine monophosphate synthetase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841887 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841887.1 Reference ASM45574v1 Primary Assembly

    Range
    4110113..4215034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006017914.3 → XP_006017976.1  integrin beta-5

    UniProtKB/TrEMBL
    A0A1U7RH62
    Conserved Domains (4) summary
    pfam00362
    Location:1 → 355
    Integrin_beta; Integrin, beta chain
    pfam07965
    Location:526 → 609
    Integrin_B_tail; Integrin beta tail domain
    pfam07974
    Location:451 → 476
    EGF_2; EGF-like domain
    pfam08725
    Location:636 → 679
    Integrin_b_cyt; Integrin beta cytoplasmic domain
Nucleotide Protein
Heading Accession and Version

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