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PODXL podocalyxin like [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102370598, updated on 10-Mar-2024

Summary

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Gene symbol
PODXL
Gene description
podocalyxin like
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841853.1 (4700751..4771610, complement)

NW_005841853.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102368575 Neighboring gene muskelin 1 Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene uncharacterized LOC102368750

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841853 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell-cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of microvillus assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microvillus membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: podocalyxin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841853.1 Reference ASM45574v1 Primary Assembly

    Range
    4700751..4771610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025213281.1 → XP_025069066.1  LOW QUALITY PROTEIN: podocalyxin

    UniProtKB/TrEMBL
    A0A3Q0HAH2
    Conserved Domains (2) summary
    pfam06365
    Location:383 → 570
    CD34_antigen; CD34/Podocalyxin family
    cl25496
    Location:64 → 365
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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