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SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102369913, updated on 10-Mar-2024

Summary

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Gene symbol
SCUBE3
Gene description
signal peptide, CUB domain and EGF like domain containing 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842137.1 (292141..407886)

NW_005842137.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1A Neighboring gene t-complex 11 Neighboring gene zinc finger protein 76 Neighboring gene DEF6 guanine nucleotide exchange factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842137 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal peptide, CUB and EGF-like domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842137.1 Reference ASM45574v1 Primary Assembly

    Range
    292141..407886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025206047.1 → XP_025061832.1  signal peptide, CUB and EGF-like domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0GR08
    Conserved Domains (5) summary
    cd00041
    Location:855 → 966
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:803 → 850
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam12947
    Location:69 → 104
    EGF_3; EGF domain
    pfam14670
    Location:333 → 368
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:365 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_025206049.1 → XP_025061834.1  signal peptide, CUB and EGF-like domain-containing protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GPW0
    Conserved Domains (4) summary
    pfam07699
    Location:747 → 794
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam12947
    Location:69 → 104
    EGF_3; EGF domain
    pfam14670
    Location:333 → 368
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:365 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_025206048.1 → XP_025061833.1  signal peptide, CUB and EGF-like domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0GUM7
    Conserved Domains (5) summary
    cd00041
    Location:819 → 930
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:767 → 814
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam12947
    Location:33 → 68
    EGF_3; EGF domain
    pfam14670
    Location:297 → 332
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:329 → 365
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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