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HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102369911, updated on 10-Mar-2024

Summary

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Gene symbol
HERC4
Gene description
HECT and RLD domain containing E3 ubiquitin protein ligase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See HERC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842118.1 (2252514..2338203, complement)

NW_005842118.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106722255 Neighboring gene sirtuin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842118 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable E3 ubiquitin-protein ligase HERC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842118.1 Reference ASM45574v1 Primary Assembly

    Range
    2252514..2338203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025205563.1 → XP_025061348.1  probable E3 ubiquitin-protein ligase HERC4 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0GT83
    Conserved Domains (2) summary
    cd00078
    Location:740 → 1019
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    cl27697
    Location:2 → 346
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  2. XM_025205564.1 → XP_025061349.1  probable E3 ubiquitin-protein ligase HERC4 isoform X7

    UniProtKB/TrEMBL
    A0A3Q0GNJ1
    Conserved Domains (2) summary
    cd00078
    Location:740 → 1019
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    cl27697
    Location:2 → 346
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  3. XM_025205561.1 → XP_025061346.1  probable E3 ubiquitin-protein ligase HERC4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GNJ8
    Conserved Domains (2) summary
    cd00078
    Location:740 → 1044
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    cl27697
    Location:2 → 346
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  4. XM_025205565.1 → XP_025061350.1  probable E3 ubiquitin-protein ligase HERC4 isoform X7

    UniProtKB/TrEMBL
    A0A3Q0GNJ1
    Conserved Domains (2) summary
    cd00078
    Location:740 → 1019
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    cl27697
    Location:2 → 346
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  5. XM_025205562.1 → XP_025061347.1  probable E3 ubiquitin-protein ligase HERC4 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0GPM2
    Conserved Domains (2) summary
    cd00078
    Location:740 → 1044
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    cl27697
    Location:2 → 346
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  6. XM_006024810.3 → XP_006024872.1  probable E3 ubiquitin-protein ligase HERC4 isoform X4

    UniProtKB/TrEMBL
    A0A1U7RK63
    Conserved Domains (3) summary
    smart00119
    Location:727 → 1046
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:701 → 1047
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam00415
    Location:208 → 257
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  7. XM_014520461.2 → XP_014375947.1  probable E3 ubiquitin-protein ligase HERC4 isoform X1

    UniProtKB/TrEMBL
    A0A1U8D3T6
    Conserved Domains (3) summary
    smart00119
    Location:766 → 1085
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:740 → 1086
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam00415
    Location:208 → 257
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  8. XM_025205560.1 → XP_025061345.1  probable E3 ubiquitin-protein ligase HERC4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0GT35
    Conserved Domains (2) summary
    cd00078
    Location:740 → 1020
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    cl27697
    Location:2 → 346
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  9. XM_025205566.1 → XP_025061351.1  probable E3 ubiquitin-protein ligase HERC4 isoform X8

    UniProtKB/TrEMBL
    A0A3Q0GNK3
    Conserved Domains (2) summary
    cl27008
    Location:740 → 876
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    cl27697
    Location:2 → 346
    RCC1; Regulator of chromosome condensation (RCC1) repeat
Nucleotide Protein
Heading Accession and Version

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