U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRIM2 tripartite motif containing 2 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102368928, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TRIM2
Gene description
tripartite motif containing 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841924.1 (565517..683711, complement)

NW_005841924.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 2 type-2 Neighboring gene transmembrane 131 like Neighboring gene meiotic nuclear divisions 1 Neighboring gene FH2 domain containing 1 Neighboring gene ADP ribosylation factor interacting protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005841924 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tripartite motif-containing protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841924.1 Reference ASM45574v1 Primary Assembly

    Range
    565517..683711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006019145.3 → XP_006019207.1  tripartite motif-containing protein 2

    See identical proteins and their annotated locations for XP_006019207.1

    UniProtKB/TrEMBL
    A0A1U7R8M1
    Conserved Domains (7) summary
    smart00502
    Location:161 → 286
    BBC; B-Box C-terminal domain
    smart00336
    Location:113 → 154
    BBOX; B-Box-type zinc finger
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    COG3391
    Location:535 → 735
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    cd00162
    Location:23 → 66
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    pfam00630
    Location:325 → 418
    Filamin; Filamin/ABP280 repeat

  2. XM_006019146.3 → XP_006019208.1  tripartite motif-containing protein 2

    See identical proteins and their annotated locations for XP_006019208.1

    UniProtKB/TrEMBL
    A0A1U7R8M1
    Conserved Domains (7) summary
    smart00502
    Location:161 → 286
    BBC; B-Box C-terminal domain
    smart00336
    Location:113 → 154
    BBOX; B-Box-type zinc finger
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    COG3391
    Location:535 → 735
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    cd00162
    Location:23 → 66
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    pfam00630
    Location:325 → 418
    Filamin; Filamin/ABP280 repeat

  3. XM_006019144.3 → XP_006019206.1  tripartite motif-containing protein 2

    See identical proteins and their annotated locations for XP_006019206.1

    UniProtKB/TrEMBL
    A0A1U7R8M1
    Conserved Domains (7) summary
    smart00502
    Location:161 → 286
    BBC; B-Box C-terminal domain
    smart00336
    Location:113 → 154
    BBOX; B-Box-type zinc finger
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    COG3391
    Location:535 → 735
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    cd00162
    Location:23 → 66
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    pfam00630
    Location:325 → 418
    Filamin; Filamin/ABP280 repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.