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GPATCH8 G-patch domain containing 8 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102368874, updated on 10-Mar-2024

Summary

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Gene symbol
GPATCH8
Gene description
G-patch domain containing 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842191.1 (1731210..1791483)

NW_005842191.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 11 Neighboring gene frizzled class receptor 2 Neighboring gene integrin subunit alpha 2b Neighboring gene family with sequence similarity 171 member A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842191 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G patch domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842191.1 Reference ASM45574v1 Primary Assembly

    Range
    1731210..1791483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025207294.1 → XP_025063079.1  G patch domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0GTF7
    Conserved Domains (2) summary
    pfam01585
    Location:26 → 68
    G-patch; G-patch domain
    pfam12171
    Location:122 → 149
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  2. XM_025207304.1 → XP_025063089.1  G patch domain-containing protein 8 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0GTH7
    Conserved Domains (1) summary
    pfam12171
    Location:58 → 85
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  3. XM_006026392.3 → XP_006026454.1  G patch domain-containing protein 8 isoform X2

    See identical proteins and their annotated locations for XP_006026454.1

    UniProtKB/TrEMBL
    A0A1U7S913
    Conserved Domains (1) summary
    pfam12171
    Location:58 → 85
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  4. XM_025207295.1 → XP_025063080.1  G patch domain-containing protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GTH6
    Conserved Domains (1) summary
    pfam12171
    Location:29 → 56
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  5. XM_025207300.1 → XP_025063085.1  G patch domain-containing protein 8 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0GY36

  6. XM_025207296.1 → XP_025063081.1  G patch domain-containing protein 8 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GTG3
    Conserved Domains (1) summary
    pfam12171
    Location:58 → 85
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  7. XM_025207302.1 → XP_025063087.1  G patch domain-containing protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GTH6
    Conserved Domains (1) summary
    pfam12171
    Location:29 → 56
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  8. XM_025207298.1 → XP_025063083.1  G patch domain-containing protein 8 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GTG3
    Conserved Domains (1) summary
    pfam12171
    Location:58 → 85
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  9. XM_025207301.1 → XP_025063086.1  G patch domain-containing protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GTH6
    Conserved Domains (1) summary
    pfam12171
    Location:29 → 56
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  10. XM_025207297.1 → XP_025063082.1  G patch domain-containing protein 8 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GTG3
    Conserved Domains (1) summary
    pfam12171
    Location:58 → 85
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  11. XM_025207299.1 → XP_025063084.1  G patch domain-containing protein 8 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GTG3
    Conserved Domains (1) summary
    pfam12171
    Location:58 → 85
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  12. XM_025207303.1 → XP_025063088.1  G patch domain-containing protein 8 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0GY36

RNA

  1. XR_003094703.1 RNA Sequence

  2. XR_003094704.1 RNA Sequence

  3. XR_003094705.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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