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ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102363312, updated on 10-Mar-2024

Summary

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Gene symbol
ADAMTS1
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif, 1
See related
Ensembl:ENSLACG00000014199
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819346.1 (980553..997527)

NW_005819346.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106703629 Neighboring gene uncharacterized LOC106703628 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 5 Neighboring gene cysteine/tyrosine-rich 1 Neighboring gene uncharacterized LOC106703630

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005819346.1 Unplaced Scaffold Reference LatCha1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Latimeria chalumnae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LatCha1 Primary Assembly

Genomic

  1. NW_005819346.1 Reference LatCha1 Primary Assembly

    Range
    980553..997527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005996833.2 → XP_005996895.1  A disintegrin and metalloproteinase with thrombospondin motifs 1

    UniProtKB/TrEMBL
    H3B2J9
    Related
    ENSLACP00000016120.2, ENSLACT00000016232.2
    Conserved Domains (6) summary
    smart00209
    Location:532 → 584
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:228 → 434
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:228 → 437
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:46 → 168
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:695 → 812
    ADAM_spacer1; ADAM-TS Spacer 1
    cl15456
    Location:453 → 518
    ADAM_CR; ADAM cysteine-rich
Nucleotide Protein
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