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TBXTB T-box transcription factor Tb [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102362660, updated on 10-Mar-2024

Summary

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Gene symbol
TBXTB
Gene description
T-box transcription factor Tb
See related
Ensembl:ENSLACG00000015449
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
TBXT
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819170.1 (1261909..1274664)

NW_005819170.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106703000 Neighboring gene SFT2 domain containing 1 Neighboring gene uncharacterized LOC106703002 Neighboring gene tetratricopeptide repeat domain 13 Neighboring gene chromosome unknown C1orf131 homolog Neighboring gene ARV1 homolog, fatty acid homeostasis modulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005819170.1 Unplaced Scaffold Reference LatCha1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mesoderm formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in somitogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brachyury protein
Names
T brachyury transcription factor
T, brachyury homolog
T-box transcription factor T

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Latimeria chalumnae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LatCha1 Primary Assembly

Genomic

  1. NW_005819170.1 Reference LatCha1 Primary Assembly

    Range
    1261909..1274664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005993347.1 → XP_005993409.1  brachyury protein isoform X1

    UniProtKB/TrEMBL
    H3B6L8
    Related
    ENSLACP00000017539.1, ENSLACT00000017669.1
    Conserved Domains (1) summary
    cd00182
    Location:42 → 223
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

  2. XM_005993348.1 → XP_005993410.1  brachyury protein isoform X2

    Conserved Domains (1) summary
    cd00182
    Location:42 → 223
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
Nucleotide Protein
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Molecular Biology Databases