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ATG13 ATG13 autophagy related 13 homolog (S. cerevisiae) [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102357923, updated on 10-Mar-2024

Summary

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Gene symbol
ATG13
Gene description
ATG13 autophagy related 13 homolog (S. cerevisiae)
See related
Ensembl:ENSLACG00000018786
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819017.1 (4500872..4543622)

NW_005819017.1Genomic Context describing neighboring genes Neighboring gene autophagy/beclin-1 regulator 1a Neighboring gene harbinger transposase derived 1 Neighboring gene SPRY domain-containing SOCS box protein 3-like Neighboring gene uncharacterized LOC106703438 Neighboring gene Rho GTPase activating protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005819017.1 Unplaced Scaffold Reference LatCha1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Atg1/ULK1 kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 13
Names
autophagy related 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Latimeria chalumnae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LatCha1 Primary Assembly

Genomic

  1. NW_005819017.1 Reference LatCha1 Primary Assembly

    Range
    4500872..4543622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005986974.2 → XP_005987036.2  autophagy-related protein 13

    UniProtKB/TrEMBL
    H3BHL1
    Related
    ENSLACP00000021382.1, ENSLACT00000021523.1
Nucleotide Protein
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