U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPATA2 spermatogenesis associated 2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102356653, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SPATA2
Gene description
spermatogenesis associated 2
See related
Ensembl:ENSLACG00000017641
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SPATA2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819124.1 (2261620..2274468, complement)

NW_005819124.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member 8 Neighboring gene opsin-5-like Neighboring gene uncharacterized LOC106702810 Neighboring gene ring finger protein 114 Neighboring gene snail family transcriptional repressor 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005819124.1 Unplaced Scaffold Reference LatCha1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K63-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein linear deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of necroptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
spermatogenesis-associated protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Latimeria chalumnae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LatCha1 Primary Assembly

Genomic

  1. NW_005819124.1 Reference LatCha1 Primary Assembly

    Range
    2261620..2274468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005992038.2 → XP_005992100.1  spermatogenesis-associated protein 2

    See identical proteins and their annotated locations for XP_005992100.1

    UniProtKB/TrEMBL
    H3BDV1, H3BDV2
    Related
    ENSLACP00000020072.2, ENSLACT00000020210.2

  2. XM_005992039.2 → XP_005992101.1  spermatogenesis-associated protein 2

    See identical proteins and their annotated locations for XP_005992101.1

    UniProtKB/TrEMBL
    H3BDV1, H3BDV2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.