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NBR1 NBR1 autophagy cargo receptor [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102353333, updated on 2-Nov-2023

Summary

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Gene symbol
NBR1
Gene description
NBR1 autophagy cargo receptor
See related
Ensembl:ENSLACG00000005097
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005821366.1 (151739..185542, complement)

NW_005821366.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106706426 Neighboring gene transmembrane protein 106A Neighboring gene BRCA1 DNA repair associated

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005821366.1 Unplaced Scaffold Reference LatCha1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
next to BRCA1 gene 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Latimeria chalumnae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LatCha1 Primary Assembly

Genomic

  1. NW_005821366.1 Reference LatCha1 Primary Assembly

    Range
    151739..185542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006010476.2 → XP_006010538.1  next to BRCA1 gene 1 protein isoform X2

    UniProtKB/TrEMBL
    H3A7X0
    Related
    ENSLACP00000005741.1, ENSLACT00000005791.1
    Conserved Domains (4) summary
    cd06396
    Location:6 → 84
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:225 → 269
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14319
    Location:954 → 992
    UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
    cd14947
    Location:379 → 489
    NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins

  2. XM_006010475.2 → XP_006010537.1  next to BRCA1 gene 1 protein isoform X1

    UniProtKB/TrEMBL
    H3A7W9, H3A7X0
    Related
    ENSLACP00000005740.1, ENSLACT00000005790.1
    Conserved Domains (4) summary
    cd06396
    Location:6 → 84
    PB1_NBR1; The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves ...
    cd02340
    Location:226 → 270
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cd14319
    Location:955 → 993
    UBA_NBR1; UBA domain of next to BRCA1 gene 1 protein (NBR1) and similar proteins
    cd14947
    Location:380 → 490
    NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins
Nucleotide Protein
Heading Accession and Version

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