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hoxa13a homeobox A13a [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102313663, updated on 10-Mar-2024

Summary

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Gene symbol
hoxa13a
Gene description
homeobox A13a
See related
Ensembl:ENSHBUG00000016694
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Also known as
hoxa13
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582477.1 (227385..229787)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179498.1 (1649827..1652648, complement)

NW_024582477.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyisobutyrate dehydrogenase a Neighboring gene even-skipped homeobox 1 Neighboring gene homeobox protein Hox-A10 Neighboring gene homeobox A11a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni. Hoegg S, et al. BMC Genomics, 2007 Sep 10. PMID 17845724, Free PMC Article
  2. Comparative transcriptomics of Eastern African cichlid fishes shows signs of positive selection and a large contribution of untranslated regions to genetic diversity. Baldo L, et al. Genome Biol Evol, 2011. PMID 21617250, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A13a
Names
homeobox A13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582477.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    227385..229787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005928643.3 → XP_005928705.1  homeobox protein Hox-A13a

    See identical proteins and their annotated locations for XP_005928705.1

    UniProtKB/TrEMBL
    A8DSY2
    Related
    ENSHBUP00000031188.1
    Conserved Domains (2) summary
    pfam00046
    Location:236 → 290
    Homeobox; Homeobox domain
    pfam12284
    Location:30 → 136
    HoxA13_N; Hox protein A13 N terminal
Nucleotide Protein
Heading Accession and Version

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