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col22a1 collagen, type XXII, alpha 1 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102308887, updated on 10-Mar-2024

Summary

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Gene symbol
col22a1
Gene description
collagen, type XXII, alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582732.1 (80376..155336)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179935.1 (234418..307598, complement)

NW_024582732.1Genomic Context describing neighboring genes Neighboring gene potassium channel, subfamily K, member 9 Neighboring gene uncharacterized LOC102309395 Neighboring gene collagen alpha-1(IX) chain Neighboring gene family with sequence similarity 135 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(XXII) chain
Names
collagen type XXII alpha 1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582732.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    80376..155336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014329217.2 → XP_014184703.1  collagen alpha-1(XXII) chain isoform X1

    Conserved Domains (4) summary
    pfam09606
    Location:753 → 1074
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:1032 → 1093
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:36 → 252
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:241 → 428
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_014329218.2 → XP_014184704.1  collagen alpha-1(XXII) chain isoform X2

    Conserved Domains (3) summary
    pfam01391
    Location:1016 → 1080
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:36 → 252
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:241 → 428
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  3. XM_005947300.3 → XP_005947362.1  collagen alpha-1(XXII) chain isoform X1

    See identical proteins and their annotated locations for XP_005947362.1

    Conserved Domains (4) summary
    pfam09606
    Location:753 → 1074
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:1032 → 1093
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:36 → 252
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:241 → 428
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  4. XM_042228960.1 → XP_042084894.1  collagen alpha-1(XXII) chain isoform X1

    Conserved Domains (4) summary
    pfam09606
    Location:753 → 1074
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:1032 → 1093
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:36 → 252
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:241 → 428
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  5. XM_014329219.2 → XP_014184705.1  collagen alpha-1(XXII) chain isoform X3

    Conserved Domains (3) summary
    pfam01391
    Location:980 → 1044
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:36 → 252
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:241 → 428
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  6. XM_014329220.2 → XP_014184706.1  collagen alpha-1(XXII) chain isoform X4

    Conserved Domains (3) summary
    pfam01391
    Location:962 → 1026
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:36 → 252
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:241 → 428
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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