U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

thumpd2 THUMP domain containing 2 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102308886, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
thumpd2
Gene description
THUMP domain containing 2
See related
Ensembl:ENSHBUG00000011780
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582879.1 (135504..144210)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179929.1 (134896..143057)

NW_024582879.1Genomic Context describing neighboring genes Neighboring gene sodium/calcium exchanger 1 Neighboring gene uncharacterized LOC102309603 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3b Neighboring gene Rho guanine nucleotide exchange factor (GEF) 33

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582879.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    135504..144210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005947209.2 → XP_005947271.1  THUMP domain-containing protein 2 isoform X1

    Conserved Domains (3) summary
    cd11715
    Location:13 → 77
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    smart00981
    Location:306 → 364
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:374 → 513
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_005947211.3 → XP_005947273.1  THUMP domain-containing protein 2 isoform X2

    See identical proteins and their annotated locations for XP_005947273.1

    UniProtKB/TrEMBL
    A0A3Q2WR35
    Related
    ENSHBUP00000028165.1
    Conserved Domains (2) summary
    smart00981
    Location:201 → 259
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:269 → 408
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  3. XM_042214108.1 → XP_042070042.1  THUMP domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2WR35
    Conserved Domains (2) summary
    smart00981
    Location:201 → 259
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:269 → 408
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.