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snai2 snail family zinc finger 2 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102299723, updated on 10-Mar-2024

Summary

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Gene symbol
snai2
Gene description
snail family zinc finger 2
See related
Ensembl:ENSHBUG00000007764
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582364.1 (3992408..3994669, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179402.1 (3061901..3064135)

NW_024582364.1Genomic Context describing neighboring genes Neighboring gene minichromosome maintenance complex component 4 Neighboring gene ubiquitin-conjugating enzyme E2 variant 2 Neighboring gene syntrophin, gamma 1 Neighboring gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein SNAI2
Names
snail family transcriptional repressor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582364.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    3992408..3994669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005912613.3 → XP_005912675.1  zinc finger protein SNAI2

    See identical proteins and their annotated locations for XP_005912675.1

    UniProtKB/TrEMBL
    A0A3Q2WTN8, A0A3Q3CLZ7
    Related
    ENSHBUP00000025652.1
    Conserved Domains (4) summary
    sd00017
    Location:179 → 199
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:122 → 142
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:205 → 227
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:192 → 215
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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