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col6a1 collagen, type VI, alpha 1 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102298040, updated on 10-Mar-2024

Summary

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Gene symbol
col6a1
Gene description
collagen, type VI, alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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See col6a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582533.1 (70670..93313, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179560.1 (1254091..1276683)

NW_024582533.1Genomic Context describing neighboring genes Neighboring gene caspase-8-like Neighboring gene collagen, type VI, alpha 2 Neighboring gene zinc finger protein 420 Neighboring gene zinc finger protein ZFMSA12A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(VI) chain
Names
collagen type VI alpha 1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582533.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    70670..93313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042225452.1 → XP_042081386.1  collagen alpha-1(VI) chain

    UniProtKB/TrEMBL
    A0A3Q2W6R7
    Conserved Domains (3) summary
    PHA03169
    Location:296 → 481
    PHA03169; hypothetical protein; Provisional
    pfam01391
    Location:384 → 440
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:31 → 217
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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