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tbx3a T-box transcription factor 3a [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102297315, updated on 10-Mar-2024

Summary

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Gene symbol
tbx3a
Gene description
T-box transcription factor 3a
See related
Ensembl:ENSHBUG00000001017
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Also known as
tbx3
Orthologs
human zebrafish all
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Genomic context

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See tbx3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582433.1 (824647..833565, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179514.1 (110730..119607, complement)

NW_024582433.1Genomic Context describing neighboring genes Neighboring gene polyamine-modulated factor 1-binding protein 1 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 Neighboring gene T-box transcription factor 5a Neighboring gene mediator complex subunit 13L Neighboring gene mitochondrial fission process 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac chamber development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX3a
Names
T-box 3
T-box transcription factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582433.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    824647..833565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005930062.3 → XP_005930124.1  T-box transcription factor TBX3a isoform X2

    See identical proteins and their annotated locations for XP_005930124.1

    Conserved Domains (2) summary
    pfam12598
    Location:304 → 385
    TBX; T-box transcription factor
    cd20188
    Location:105 → 286
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

  2. XM_005930061.3 → XP_005930123.1  T-box transcription factor TBX3a isoform X1

    See identical proteins and their annotated locations for XP_005930123.1

    UniProtKB/TrEMBL
    A0A3Q3D166
    Related
    ENSHBUP00000035438.1
    Conserved Domains (2) summary
    pfam12598
    Location:309 → 390
    TBX; T-box transcription factor
    cd20188
    Location:105 → 291
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
Nucleotide Protein
Heading Accession and Version

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