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lrrfip2 leucine rich repeat (in FLII) interacting protein 2 [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102295464, updated on 10-Mar-2024

Summary

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Gene symbol
lrrfip2
Gene description
leucine rich repeat (in FLII) interacting protein 2
See related
Ensembl:ENSHBUG00000010983
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582457.1 (712682..733995, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179484.1 (708553..729173, complement)

NW_024582457.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 83 member Ha Neighboring gene mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) Neighboring gene dishevelled-binding antagonist of beta-catenin 2 Neighboring gene SPARC related modular calcium binding 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat flightless-interacting protein 2
Names
LRR binding FLII interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582457.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    712682..733995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005927098.3 → XP_005927160.1  leucine-rich repeat flightless-interacting protein 2 isoform X1

    Conserved Domains (1) summary
    pfam09738
    Location:327 → 685
    DUF2051; Double stranded RNA binding protein (DUF2051)

  2. XM_005927099.3 → XP_005927161.1  leucine-rich repeat flightless-interacting protein 2 isoform X3

    Conserved Domains (1) summary
    pfam09738
    Location:304 → 662
    DUF2051; Double stranded RNA binding protein (DUF2051)

  3. XM_014335116.2 → XP_014190602.1  leucine-rich repeat flightless-interacting protein 2 isoform X2

    Conserved Domains (1) summary
    pfam09738
    Location:309 → 667
    DUF2051; Double stranded RNA binding protein (DUF2051)

  4. XM_005927100.3 → XP_005927162.1  leucine-rich repeat flightless-interacting protein 2 isoform X4

    Conserved Domains (1) summary
    pfam09738
    Location:327 → 661
    DUF2051; Double stranded RNA binding protein (DUF2051)

  5. XM_005927101.3 → XP_005927163.1  leucine-rich repeat flightless-interacting protein 2 isoform X5

    Conserved Domains (1) summary
    pfam09738
    Location:327 → 654
    DUF2051; Double stranded RNA binding protein (DUF2051)

  6. XM_042222839.1 → XP_042078773.1  leucine-rich repeat flightless-interacting protein 2 isoform X6

    Conserved Domains (1) summary
    TIGR02169
    Location:379 → 702
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  7. XM_005927102.3 → XP_005927164.1  leucine-rich repeat flightless-interacting protein 2 isoform X7

    Conserved Domains (1) summary
    pfam09738
    Location:327 → 620
    DUF2051; Double stranded RNA binding protein (DUF2051)

  8. XM_042222840.1 → XP_042078774.1  leucine-rich repeat flightless-interacting protein 2 isoform X8

    Conserved Domains (2) summary
    COG1196
    Location:232 → 498
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam09738
    Location:53 → 424
    LRRFIP; LRRFIP family

  9. XM_042222841.1 → XP_042078775.1  leucine-rich repeat flightless-interacting protein 2 isoform X9

    Conserved Domains (1) summary
    pfam09738
    Location:53 → 400
    LRRFIP; LRRFIP family

  10. XM_042222842.1 → XP_042078776.1  leucine-rich repeat flightless-interacting protein 2 isoform X10

    Conserved Domains (1) summary
    pfam09738
    Location:53 → 393
    LRRFIP; LRRFIP family

  11. XM_042222843.1 → XP_042078777.1  leucine-rich repeat flightless-interacting protein 2 isoform X11

    UniProtKB/TrEMBL
    A0A3Q2WZ01
    Conserved Domains (1) summary
    pfam09738
    Location:53 → 369
    LRRFIP; LRRFIP family

  12. XM_005927104.3 → XP_005927166.1  leucine-rich repeat flightless-interacting protein 2 isoform X12

    See identical proteins and their annotated locations for XP_005927166.1

    UniProtKB/TrEMBL
    A0A3Q2WNU0
    Related
    ENSHBUP00000027646.1
    Conserved Domains (2) summary
    pfam05266
    Location:332 → 402
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:53 → 359
    LRRFIP; LRRFIP family

  13. XM_005927105.3 → XP_005927167.1  leucine-rich repeat flightless-interacting protein 2 isoform X13

    See identical proteins and their annotated locations for XP_005927167.1

    Related
    ENSHBUP00000027724.1
    Conserved Domains (3) summary
    pfam05266
    Location:308 → 378
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:53 → 335
    LRRFIP; LRRFIP family
    pfam11932
    Location:351 → 410
    DUF3450; Protein of unknown function (DUF3450)
Nucleotide Protein
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