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tfeb transcription factor EB [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102294248, updated on 10-Mar-2024

Summary

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Gene symbol
tfeb
Gene description
transcription factor EB
See related
Ensembl:ENSHBUG00000006246
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582440.1 (2067144..2095654, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179467.1 (189644..218158)

NW_024582440.1Genomic Context describing neighboring genes Neighboring gene forkhead box P4 Neighboring gene MyoD family inhibitor Neighboring gene transmembrane protein 183A Neighboring gene PTPRF interacting protein alpha 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in humoral immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor EB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582440.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    2067144..2095654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005924681.2 → XP_005924743.1  transcription factor EB isoform X3

    See identical proteins and their annotated locations for XP_005924743.1

    Conserved Domains (3) summary
    cd18927
    Location:237 → 327
    bHLHzip_TFEB; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EB (TFEB) and similar proteins
    pfam11851
    Location:332 → 515
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:4 → 171
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  2. XM_005924683.2 → XP_005924745.1  transcription factor EB isoform X3

    See identical proteins and their annotated locations for XP_005924745.1

    Conserved Domains (3) summary
    cd18927
    Location:237 → 327
    bHLHzip_TFEB; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EB (TFEB) and similar proteins
    pfam11851
    Location:332 → 515
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:4 → 171
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  3. XM_005924685.3 → XP_005924747.1  transcription factor EB isoform X3

    See identical proteins and their annotated locations for XP_005924747.1

    Conserved Domains (3) summary
    cd18927
    Location:237 → 327
    bHLHzip_TFEB; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EB (TFEB) and similar proteins
    pfam11851
    Location:332 → 515
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:4 → 171
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  4. XM_005924682.3 → XP_005924744.1  transcription factor EB isoform X3

    See identical proteins and their annotated locations for XP_005924744.1

    Conserved Domains (3) summary
    cd18927
    Location:237 → 327
    bHLHzip_TFEB; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EB (TFEB) and similar proteins
    pfam11851
    Location:332 → 515
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:4 → 171
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  5. XM_042222083.1 → XP_042078017.1  transcription factor EB isoform X3

    Conserved Domains (3) summary
    cd18927
    Location:237 → 327
    bHLHzip_TFEB; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EB (TFEB) and similar proteins
    pfam11851
    Location:332 → 515
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:4 → 171
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  6. XM_042222082.1 → XP_042078016.1  transcription factor EB isoform X1

    Conserved Domains (1) summary
    cd18927
    Location:281 → 371
    bHLHzip_TFEB; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EB (TFEB) and similar proteins

  7. XM_005924684.2 → XP_005924746.2  transcription factor EB isoform X2

    Conserved Domains (1) summary
    cd18927
    Location:279 → 369
    bHLHzip_TFEB; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EB (TFEB) and similar proteins
Nucleotide Protein
Heading Accession and Version

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