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sfpq splicing factor proline/glutamine-rich [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102293822, updated on 10-Mar-2024

Summary

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Gene symbol
sfpq
Gene description
splicing factor proline/glutamine-rich
See related
Ensembl:ENSHBUG00000016818
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582532.1 (138173..156946, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179699.1 (605099..623886)

NW_024582532.1Genomic Context describing neighboring genes Neighboring gene type-2 ice-structuring protein-like Neighboring gene uncharacterized LOC102297550 Neighboring gene zinc finger MYM-type containing 4, tandem duplicate 1 Neighboring gene lysophospholipase 2 Neighboring gene PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor, proline- and glutamine-rich
Names
splicing factor proline and glutamine rich

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582532.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    138173..156946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042225442.1 → XP_042081376.1  splicing factor, proline- and glutamine-rich isoform X2

    UniProtKB/TrEMBL
    A0A3Q3C6E1
    Conserved Domains (6) summary
    TIGR01628
    Location:273 → 430
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK13042
    Location:87 → 144
    PRK13042; superantigen-like protein SSL4; Reviewed
    smart00360
    Location:281 → 347
    RRM; RNA recognition motif
    PRK14949
    Location:63 → 179
    PRK14949; DNA polymerase III subunits gamma and tau; Provisional
    pfam17380
    Location:480 → 591
    DUF5401; Family of unknown function (DUF5401)
    cl06904
    Location:425 → 521
    eNOPS_SF; NOPS domain, including C-terminal helical extension region, in the p54nrb/PSF/PSP1 family

  2. XM_005940957.3 → XP_005941019.1  splicing factor, proline- and glutamine-rich isoform X1

    UniProtKB/TrEMBL
    A0A3Q2VRP7
    Related
    ENSHBUP00000014932.1
    Conserved Domains (3) summary
    cd12333
    Location:355 → 434
    RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
    cd12587
    Location:279 → 349
    RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
    cl06904
    Location:425 → 521
    eNOPS_SF; NOPS domain, including C-terminal helical extension region, in the p54nrb/PSF/PSP1 family

  3. XM_042225443.1 → XP_042081377.1  splicing factor, proline- and glutamine-rich isoform X3

    Conserved Domains (6) summary
    TIGR01628
    Location:273 → 430
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK13042
    Location:87 → 144
    PRK13042; superantigen-like protein SSL4; Reviewed
    smart00360
    Location:281 → 347
    RRM; RNA recognition motif
    PRK14949
    Location:63 → 179
    PRK14949; DNA polymerase III subunits gamma and tau; Provisional
    pfam17380
    Location:480 → 591
    DUF5401; Family of unknown function (DUF5401)
    cl06904
    Location:425 → 521
    eNOPS_SF; NOPS domain, including C-terminal helical extension region, in the p54nrb/PSF/PSP1 family

  4. XM_042225444.1 → XP_042081378.1  splicing factor, proline- and glutamine-rich isoform X4

    Conserved Domains (5) summary
    TIGR01628
    Location:273 → 430
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK13042
    Location:87 → 144
    PRK13042; superantigen-like protein SSL4; Reviewed
    smart00360
    Location:281 → 347
    RRM; RNA recognition motif
    PRK14949
    Location:63 → 179
    PRK14949; DNA polymerase III subunits gamma and tau; Provisional
    cl06904
    Location:425 → 521
    eNOPS_SF; NOPS domain, including C-terminal helical extension region, in the p54nrb/PSF/PSP1 family
Nucleotide Protein
Heading Accession and Version

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