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trps1 trichorhinophalangeal syndrome I [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102293240, updated on 10-Mar-2024

Summary

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Gene symbol
trps1
Gene description
trichorhinophalangeal syndrome I
See related
Ensembl:ENSHBUG00000023601
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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See trps1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582386.1 (272280..386858)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179419.1 (3240082..3354728, complement)

NW_024582386.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene CUB and Sushi multiple domains 3b Neighboring gene uncharacterized LOC121814188 Neighboring gene teashirt homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1
Names
transcriptional repressor GATA binding 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582386.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    272280..386858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005917580.2 → XP_005917642.1  zinc finger transcription factor Trps1

    See identical proteins and their annotated locations for XP_005917642.1

    UniProtKB/TrEMBL
    A0A3Q3D168
    Conserved Domains (2) summary
    smart00401
    Location:980 → 1023
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:984 → 1040
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_005917581.3 → XP_005917643.1  zinc finger transcription factor Trps1

    See identical proteins and their annotated locations for XP_005917643.1

    UniProtKB/TrEMBL
    A0A3Q3D168
    Conserved Domains (2) summary
    smart00401
    Location:980 → 1023
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:984 → 1040
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  3. XM_005917579.3 → XP_005917641.1  zinc finger transcription factor Trps1

    See identical proteins and their annotated locations for XP_005917641.1

    UniProtKB/TrEMBL
    A0A3Q3D168
    Related
    ENSHBUP00000035443.1
    Conserved Domains (2) summary
    smart00401
    Location:980 → 1023
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:984 → 1040
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

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