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nrde2 NRDE-2, necessary for RNA interference, domain containing [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102292501, updated on 10-Mar-2024

Summary

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Gene symbol
nrde2
Gene description
NRDE-2, necessary for RNA interference, domain containing
See related
Ensembl:ENSHBUG00000016736
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582535.1 (768675..781969, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179563.1 (562603..575940)

NW_024582535.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 7B Neighboring gene calmodulin-1 Neighboring gene tubulin beta-4B chain Neighboring gene zinc finger MYM-type protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear exosome regulator NRDE2
Names
protein NRDE2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582535.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    768675..781969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005933873.3 → XP_005933935.1  nuclear exosome regulator NRDE2

    UniProtKB/TrEMBL
    A0A3Q2VSM4
    Related
    ENSHBUP00000014870.1
    Conserved Domains (1) summary
    pfam08424
    Location:306 → 626
    NRDE-2; NRDE-2, necessary for RNA interference
Nucleotide Protein
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