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tspan18b tetraspanin 18b [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102290419, updated on 10-Mar-2024

Summary

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Gene symbol
tspan18b
Gene description
tetraspanin 18b
See related
Ensembl:ENSHBUG00000003909
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Also known as
tspan18
Orthologs
zebrafish all
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Genomic context

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See tspan18b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582438.1 (1050741..1086779, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179503.1 (1237850..1274014)

NW_024582438.1Genomic Context describing neighboring genes Neighboring gene LIM domain only 2 (rhombotin-like 1) Neighboring gene ALX homeobox 4b Neighboring gene CD82 molecule b Neighboring gene tumor protein p53 inducible protein 11b Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative transcriptomics of Eastern African cichlid fishes shows signs of positive selection and a large contribution of untranslated regions to genetic diversity. Baldo L, et al. Genome Biol Evol, 2011. PMID 21617250, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-18b
Names
tetraspanin 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582438.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    1050741..1086779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005929112.3 → XP_005929174.1  tetraspanin-18b

    UniProtKB/TrEMBL
    A0A3Q2V5X1, A0A3Q2WMB3
    Related
    ENSHBUP00000002668.1
    Conserved Domains (2) summary
    cd03156
    Location:118 → 229
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:20 → 257
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version

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