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dmd dystrophin [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102289842, updated on 10-Mar-2024

Summary

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Gene symbol
dmd
Gene description
dystrophin
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See dmd in Genome Data Viewer
Location:
chromosome: Un
Exon count:
84
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582566.1 (120383..430197)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179654.1 (9594..227217)

NW_024582566.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121815405 Neighboring gene general transcription factor IIIC, polypeptide 3 Neighboring gene E3 ubiquitin-protein ligase HECW2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in synaptic signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dystrophin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582566.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    120383..430197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042226291.1 → XP_042082225.1  dystrophin

    Conserved Domains (8) summary
    COG1196
    Location:1201 → 1976
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00176
    Location:366 → 583
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd00201
    Location:3014 → 3040
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    cd02334
    Location:3263 → 3311
    ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
    cd15901
    Location:3077 → 3116
    EFh_DMD_DYTN_DTN; EF-hand-like motif [structural motif]
    cl07621
    Location:3077 → 3238
    EFh_DMD_DYTN_DTN; EF-hand-like motif found in the dystrophin/dystrobrevin/dystrotelin family
    cl00030
    Location:154 → 264
    CH_SF; calponin homology (CH) domain superfamily
    cl02488
    Location:585 → 858
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
Nucleotide Protein
Heading Accession and Version

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