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KDM3B lysine demethylase 3B [ Bos mutus (wild yak) ]

Gene ID: 102288360, updated on 10-Mar-2024

Summary

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Gene symbol
KDM3B
Gene description
lysine demethylase 3B
Locus tag
M91_11409
See related
Ensembl:ENSBMUG00000025951
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos mutus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
101 current BosGru_v2.0 (GCF_000298355.1) Unplaced Scaffold NW_005393305.1 (2264671..2309880)

NW_005393305.1Genomic Context describing neighboring genes Neighboring gene oocyte-specific histone RNA stem-loop-binding protein 2-like Neighboring gene family with sequence similarity 53 member C Neighboring gene receptor accessory protein 2 Neighboring gene early growth response 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005393305.1 Unplaced Scaffold Reference BosGru_v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 3B
Names
Lysine-specific demethylase 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos mutus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BosGru_v2.0 Primary Assembly

Genomic

  1. NW_005393305.1 Reference BosGru_v2.0 Primary Assembly

    Range
    2264671..2309880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005891715.1 → XP_005891777.1  lysine-specific demethylase 3B isoform X2

    UniProtKB/TrEMBL
    L8ITD0
    Conserved Domains (2) summary
    smart00558
    Location:1154 → 1226
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1251 → 1356
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_005891714.1 → XP_005891776.1  lysine-specific demethylase 3B isoform X1

    UniProtKB/TrEMBL
    L8ITD0
    Related
    ENSBMUP00000034859.1, ENSBMUT00000040102.1
    Conserved Domains (2) summary
    smart00558
    Location:1340 → 1412
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1437 → 1542
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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