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tbpl1 TBP-like 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102229851, updated on 10-Mar-2024

Summary

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Gene symbol
tbpl1
Gene description
TBP-like 1
See related
Ensembl:ENSXMAG00000004323
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 15 NC_036457.1 (13083947..13090565)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372224.1 (1587855..1593463)

Chromosome 15 - NC_036457.1Genomic Context describing neighboring genes Neighboring gene zinc-binding protein A33-like Neighboring gene transcription factor 21 Neighboring gene solute carrier family 2 member 12 Neighboring gene serum/glucocorticoid regulated kinase 1 Neighboring gene aldehyde dehydrogenase 8 family, member A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA box-binding protein-like protein 1
Names
TATA-box binding protein like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036457.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    13083947..13090565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005800234.3 → XP_005800291.1  TATA box-binding protein-like protein 1

    UniProtKB/TrEMBL
    M3ZQ48
    Related
    ENSXMAP00000004341.2, ENSXMAT00000004346.2
    Conserved Domains (1) summary
    cd04517
    Location:9 → 180
    TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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